The Gynaecology and Obstetrics doctoral program includes projects undertaken in the whole range of subspecialties within the discipline as well as those undertaken in cooperation with other disciplines. The expected level of professional knowledge should meet the EBCOG specialty examination requirements. The Department of Gynaecology and Obstetrics at the Medical Faculty, Charles University in Pilsen focuses its scientific and research activities on the following themes: Oncogynaecology, Pelvic Floor Surgery, Immunology of Reproduction, Urogynaecology, Peripartum care, and Gynaecological Endoscopy. There is close cooperation with the Biomedical Centre of the Medical Faculty, a leading and state-of-the-art research establishment. The Department of Gynaecology and Obstetrics also serves as a regional tertiary referral and postgraduate training center. Study program without specialization.

The graduate masters the basic methodology of molecular biology and genetics, gene engineering, population genetics, and microscopy, which is able to practice, apply and interpret in research, clinical practice, or education. The graduate has a general overview of the basic statistical methods used in the evaluation of the results. The graduate demonstrated the ability of independent, creative, and team scientific work, can process and interpret the results, and is able to present these results at the scientific forum in Czech and English. The graduate is fully acquainted with the rules of ethics of scientific work, rules, and ethics associated with the interpretation of results, handling of patients' data, and work with genetically modified organisms (GMO), principles of animal protection against cruelty, and working in harmony with them.

The dental study program consists of the following topics: Oral and Maxillofacial Surgery, Prosthetics, Restorative Dentistry and Endodontics, Periodontology and Oral Medicine, Pediatric Dentistry, and Orthodontics. The aim of the postgraduate study of Stomatology is to extend, deepen the knowledge of doctoral students not only in the basic Stomatology field but also in related fields (borderline) and, on that basis, independent scientific work. The main part of the study is solving a specific research task in the field of stomatology, which is in accordance with the research focus of the department. The results of the solution of the given topic are processed by the doctoral student in his / her dissertation. At the same time, it continuously presents them both in the form of a professional article in the relevant periodical and in the form of oral communication at domestic or foreign professional meetings. Study program without specialization.

The program includes general and special orthopedics incl. alloplasty, spondylosurgery, arthroscopy, pediatric orthopedics, and traumatology of the motoric system. Orthopedics is a surgical discipline dealing with the diagnosis, prevention, and treatment of congenital or acquired disorders, deformities, and functional problems (traumatic and non-traumatic) musculoskeletal system. Study program without specialization.

The study program Pathology includes mainly the following topics: correlation of morphological and molecular findings in cancers with special reference to differential diagnostics, to the methods of detection of viral and bacterial pathogens in carcinogenesis, and to clinicopathologic correlations in hematooncology, head and neck pathology, salivary gland oncology, pathology and oncology of urogenital, respiratory, and gastrointestinal tract. The study program underlines description of poorly understood and newly recognized tumor entities, as well This study program is without specialization.

Over the last two decades, experimental surgery has undergone substantial development following the advancements of its related fields, which considerably extended its research possibilities. These related fields include oncology, anesthesiology, intensive medicine, imaging methods, molecular biology, tissue engineering, biomechanics, software modeling, etc. These fields enabled the research spectrum of experimental surgery to encompass for example experimental treatment of cancer and non-cancerous diseases, and research of artificial organs. Such progress is also allowed to be an up-to-date implementation of the “3Rs” principle of work with experimental animals. The basic domain is the understanding of the methods and procedures of experimental surgery in conjunction with the bordering fields mentioned above. The connection to the clinical fields is crucial as well, as these often define the research questions and apply the results of the research. All of these fields are available for science and research activities.

Medical pharmacology is a basic experimental biomedical field that deals with the kinetics and dynamics of drugs summarizes current knowledge in this area, and solves experimental problems of current pharmacokinetics, pharmacodynamics, drug interactions, drug side effects. The results are the basis for clinical pharmacology and pharmacotherapy. It is a study program without specialization.

Medical microbiology is progressively developing medical discipline closely cooperating with many clinical specializations, e.g. intensive care medicine, transplantology, surgery). For diagnostic purposes, advanced molecular-genetic and proteomic techniques are used. The basic goal of current medical microbiology is to understand the interaction between the pathogen and the host, i.e. understanding the pathogenesis of infectious diseases. The research is also focused on the development of novel diagnostic procedures, efficient therapy, epidemiology of infectious diseases, etc. The study program without specialization.

Students of the study program internal diseases must learn during the study the basic scientific principles: literature research preparation, the optimal choice of groups of patients or the experimental groups, get to know some diagnostic methods (laboratory, immunoanalytical, imaging). Work topics will include etiopathogenesis of the cardiovascular diseases, cancer diseases, endocrinology diseases, diagnostics and therapy of acute conditions in internal medicine, and the issues related to the vitally essential organs and function replacement. Study program without specialization.

Imaging science is paying attention to the diagnostic and therapeutic application of the imaging methods of radiology and also nuclear medicine. Imaging is cooperating with other basic medicine disciplines very closely. The absolvent of the doctor studying program imaging science in medicine acquires the scientific erudition based on the combination of theoretical study, clinical practice, and scientific work in the concrete scientific-research assignment. The theoretical part of the study includes the whole range of the discipline (the insolvent reaches detailed knowledge of the problems related to the dissertation work and knowledge of the other parts of radiology on the level of the specialization examination at a minimum). Theoretical education is completed with mandatory and voluntary specialized courses and research fellowships. The clinical part is done at the imaging department according to the topic of the dissertation work. The scientific-research part is based on the solving of the concrete assignment and on the publication of the research results. During the completing the research assignment, the absolvent is learned to work indecently on a scientific project, to create theses, to study literature, to verify hypotheses on the selected sample, to interpret results, and to publish them in scientific journals and during congresses. The study is finished by the state examination and the defense of the dissertation work. The successful absolvent reaches the scientific degree of Ph.D., Study program without specialization.

Anatomy, Histology, and Embryology study program includes classical systematic macroanatomy, topographic anatomy, modern clinical anatomy, microscopic anatomy, histology (light microscopy and electron microscopy), immunohistochemistry, and cytology (morphology, biology, and pathology of the cell). Embryology is also included with special emphasis on the effect of environmental congenital developmental defects. This study program is without specialization.

Postgraduate study in Physiology and Pathophysiology is focused on the investigation of functions of organs and organ systems during responses and adaptations to changes in the external and internal environments in health and disease. The transition from studies of indirect manifestations of certain functions to their own functional and regulatory mechanisms at the cellular and molecular levels predominates. The acquired knowledge is fundamental for the prevention, diagnosis, and treatment of human diseases. Study program without specialization.

Graduates of a corresponding master's degree program have an opportunity to expand their knowledge in doctoral studies at the Faculty of Electrical Engineering at the University of West Bohemia in Pilsen. This degree is the third-highest degree of university studies, it is full-time and its standard length is 4 years (maximum duration of study is 6 years).

Graduates from the follow-up master's degree program may be admitted to study on a doctoral degree program in materials, technology, quality, or metrology. This study is the third, highest level of university study, is in full-time or combined form and the standard study period is 4 years. Graduates from doctoral study programs are awarded the academic title of Doctor, abbreviated to Ph.D. after their name.

Graduates from the master's degree program may be admitted to study on the doctoral degree program in the field of industrial engineering and management. This study is the third, highest level of university study, is in full-time or combined form and the standard study period is 4 years.